#include <FilamentMapping.h>

Inheritance diagram for FilamentMapping:

Collaboration diagram for FilamentMapping:

Public Types
enum	FilamentType { OPEN_FILAMENT, CLOSED_FILAMENT, USER_DEFINED_CURVE_FILAMENT }

enum	FilamentBoundaryType { THICK_FILAMENT_BOUNDARY, ONE_SIDED_FILAMENT_BOUNDARY, THIN_TWO_SIDED_FILAMENT_BOUNDARY }

enum	BoundaryMotionType { NO_MOTION, RIGID_BODY_MOTION, TRAVELING_WAVE_MOTION, TRANSLATING_MOTION }

Public Types inherited from Mapping
enum	mappingSpace { parameterSpace, cartesianSpace }

enum	coordinateSystem { cartesian, spherical, cylindrical, polar, toroidal, numberOfCoordinateSystems }

enum	coordinateSingularity { noCoordinateSingularity, polarSingularity }

enum	mappingCoordinateSystem { rectangular, conformal, orthogonal, general }

enum	periodicType { notPeriodic, derivativePeriodic, functionPeriodic }

enum	topologyEnum { topologyIsNotPeriodic =0, topologyIsPeriodic, topologyIsPartiallyPeriodic }

enum	mappingItemName { mappingName, domainName, rangeName, domainAxis1Name, domainAxis2Name, domainAxis3Name, rangeAxis1Name, rangeAxis2Name, rangeAxis3Name, numberOfMappingItemNames }

enum	basicInverseOptions { canDoNothing, canDetermineOutside, canInvert, canInvertWithGoodGuess }

typedef ArraySimpleFixed< int, 2, 3, 1, 1 >	IndexRangeType

Public Member Functions
	FilamentMapping (int nFilamentPoints=17, int nEndPoints=7, real thickness=0.04, real endRadius=0.02)

	~FilamentMapping ()

	FilamentMapping (const FilamentMapping &, const CopyType copyType=DEEP)

FilamentMapping &	operator= (const FilamentMapping &xmap00)

void	map (const realArray &r, realArray &x, realArray &xr=Overture::nullRealDistributedArray(), MappingParameters &params=Overture::nullMappingParameters())

void	basicInverse (const realArray &x, realArray &r, realArray &rx, MappingParameters &params)

virtual int	get (const GenericDataBase &dir, const aString &name)

virtual int	put (GenericDataBase &dir, const aString &name) const

Mapping *	make (const aString &mappingClassName)

aString	getClassName () const

int	update (MappingInformation &mapInfo)

void	replaceHyperbolicMapping (HyperbolicMapping *pNewHyper)

void	evaluateAtTime (real time00)

void	evaluateSurfaceAtTime (real time0, SplineMapping *curvePosition)

void	evaluateCenterLineAtTime (real time00)

void	getVelocity (realArray &x_t, realArray &xr_t)

void	getAcceleration (realArray &x_tt, realArray &xr_tt)

void	getCorePoints (realArray &x00)

void	getCoreDerivative (realArray &xr00)

void	setupTimeDerivatives (realArray &x_t, realArray &x_tt, realArray &xr, realArray &xr_t, realArray &xr_tt)

void	getSurfacePoints (realArray &xSurface)

void	getSurfaceVelocity (realArray &coreVelocity, realArray &surfaceVelocity)

void	getSurfaceAcceleration (realArray &coreAcceleration, realArray &surfaceAcceleration)

void	regenerateBodyFittedMapping ()

void	copyBodyFittedMapping (HyperbolicMapping &copyMap, aString *pMappingRename=NULL)

void	setOffset (real xOffset=0., real yOffset=0.)

void	setLength (real length00)

void	setTravelingWaveParameters (real length00=1., real aParam00=0.1, real bParam00=0.05, real omega00=1.2, real knum00=1.2)

void	setTranslatingMotionParameters (real tangX, real tangY, real velo)

void	getTranslatingMotionParameters (real &tangX, real &tangY, real &velo)

void	setFilamentTime (real newTime)

void	setFilamentTimeOffset (real newTime)

void	setThicknessAndEndRadius (real thick00, real endRadius00)

void	setNumberOfFilamentPoints (int nFilamentPoints00, int nSplinePoints)

void	setNumberOfFilamentPoints (int nFilamentPoints00)

int	getNumberOfFilamentPoints ()

void	setNumberOfEndPoints (int nEndPoints00=5)

void	setNumberOfThickSplinePoints (int nThickFilamPts)

void	setNumberOfThickSplinePoints ()

int	getNumberOfThickFilamentPoints ()

int	getDefaultNumberOfThickFilamentPoints (int nFilam, int nEnd)

void	setMotionType (BoundaryMotionType motionType00)

void	setFilamentType (FilamentType filamentType00)

void	setFilamentBoundaryType (FilamentBoundaryType filamBdryType00)

void	setHyperbolicMappingParameters (real distanceToMarch00=0.3, real dissipation00=0.2)

void	setHyperbolicGridDimensions (int gridDimension1_, int gridDimension2_, int gridGenDimension1_, int gridGenDimension2_)

void	setHyperbolicGridInfo ()

void	getHyperbolicGridInfo ()

HyperbolicMapping *	getHyperbolicMappingPointer ()

void	releaseHyperbolicMappingPointer (HyperbolicMapping *&pHyp00)

void	regenerateBodyFittedMapping (HyperbolicMapping *pHyper)

void	setFilamentStorageNeedsUpdate ()

Mapping *	getSurfaceForHyperbolicMap ()

void	constructor (int nFilamentPoints00, real thickness00, real endRadius00)

void	setDefaultHyperbolicParameters ()

void	initializeFilamentStorage ()

void	initializeBodyFittedMapping (Mapping *pSurface)

void	initializeBodyFittedMapping ()

bool	updateFilamentAndGrid ()

void	formNormalizedParametrization (realArray &r00)

void	formChebyshevParametrization (realArray &r00)

void	getParametrization (realArray &r00)

void	computeGeometricData ()

void	computeThickFilament ()

void	setCenterLineMapping (Mapping *pMapping)

void	displayParameters ()

void	useStretching (StretchMapping::StretchingType st=StretchMapping::inverseHyperbolicTangent, int numberOfLayers=2, bool stretchFlag=true)

void	getStretchingParameters (int i, real &a, real &b, real &c)

void	setStretchingParameters (int i, real a, real b, real c)

int	getLeadingEndNumberOfPoints ()

void	setLeadingEndNumberOfPoints (int jj)

int	getTrailingEndNumberOfPoints ()

void	setTrailingEndNumberOfPoints (int jj)

void	setEndPointScaling (real leadingXtra, real trailingXtra)

void	updateNumberOfEndPoints ()

void	computeDrFlatSmoothSpacing (real dr00, real sr00, real thickness00, real xtraScaling, int &numberOfEndPoints)

void	computeFlatSmoothSpacing (real endSpacing, real thickness00, real xtraScaling, int &numberOfEndPoints)

void	computeUserDefinedCenterLineFilament (real t, realArray &r, realArray &x, realArray &xr)

void	computeTranslatingMotionOffset (real time00, real xOffset00, real yOffset00, real &xNew, real &yNew, real &xNew_t, real &yNew_t, real &xNew_tt, real &yNew_tt)

void	computeTravelingWaveFilament (real t, realArray &r, realArray &x, realArray &xr)

void	computeTravelingWaveFilament (real t, realArray &r, realArray &x, realArray &xr, real xOffset00, real yOffset00)

void	computeTravelingWaveFilamentTimeDerivatives (real tcomp, realArray &r00, realArray &x00, realArray &xr00, realArray &x_t, realArray &x_tt, realArray &xr_t, realArray &xr_tt, const real xOffset00=0., const real yOffset00=0., const real xOffset_t=0., const real yOffset_t=0., const real xOffset_tt=0., const real yOffset_tt=0.)

void	computeCurveFrameTimeDerivatives (realArray &xr00, realArray &xr_t, realArray &xr_tt, realArray &n_t, realArray &s_t, realArray &n_tt, realArray &s_tt)

void	computeCircularFilament (real tcomp, realArray &r00, realArray &x00, realArray &xr00, real xOffset00=0., real yOffset00=0.)

void	getPerpendicular (const realArray &x, realArray &out)

void	dotProduct (const realArray &x, const realArray &y, realArray &out)

void	printHyperbolicDimensions ()

void	saveCurve (const realArray &curve, const aString &filename)

Public Member Functions inherited from Mapping
	Mapping (int domainDimension=3, int rangeDimension=3, mappingSpace domainSpace=parameterSpace, mappingSpace rangeSpace=cartesianSpace, coordinateSystem domainCoordinateSystem=cartesian, coordinateSystem rangeCoordinateSystem=cartesian)

	Mapping (const Mapping &, const CopyType copyType=DEEP)

Mapping &	operator= (const Mapping &X)

virtual	~Mapping ()

void	reference (const Mapping &map)

void	breakReference ()

virtual void	inverseMap (const realArray &x, realArray &r, realArray &rx=Overture::nullRealDistributedArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	mapC (const realArray &r, const realArray &x, const realArray &xr=Overture::nullRealDistributedArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	inverseMapC (const realArray &x, const realArray &r, const realArray &rx=Overture::nullRealDistributedArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	mapGrid (const realArray &r, realArray &x, realArray &xr=Overture::nullRealDistributedArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual int	intersects (Mapping &map2, const int &side1=-1, const int &axis1=-1, const int &side2=-1, const int &axis2=-1, const real &tol=0.) const

virtual void	inverseMapGrid (const realArray &x, realArray &r, realArray &rx=Overture::nullRealDistributedArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	mapS (const RealArray &r, RealArray &x, RealArray &xr=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	inverseMapS (const RealArray &x, RealArray &r, RealArray &rx=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	basicInverseS (const RealArray &x, RealArray &r, RealArray &rx=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	mapCS (const RealArray &r, const RealArray &x, const RealArray &xr=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	inverseMapCS (const RealArray &x, const RealArray &r, const RealArray &rx=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	mapGridS (const RealArray &r, RealArray &x, RealArray &xr=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual void	inverseMapGridS (const RealArray &x, RealArray &r, RealArray &rx=Overture::nullRealArray(), MappingParameters &params=Overture::nullMappingParameters())

virtual int	projectS (RealArray &x, MappingProjectionParameters &mpParams)

virtual real	sizeOf (FILE *file=NULL) const

virtual bool	updateWithCommand (MappingInformation &mapInfo, const aString &command)

virtual int	interactiveUpdate (GenericGraphicsInterface &gi)

virtual int	project (realArray &x, MappingProjectionParameters &mpParams)

virtual void	display (const aString &label=blankString) const

int	checkMapping ()

void	reinitialize ()

int	determineResolution (int numberOfGridPoints[], bool collapsedEdge[2][3], real averageArclength[], real elementDensityTolerance=.05)

void	secondOrderDerivative (const Index &I, const realArray &r, realArray &xrr, const int axis, const int &rAxis)

int	findNearestGridPoint (RealArray &x, RealArray &r, RealArray &dista, RealArray &xa)
	Find the nearest grid point to each of a given set of points x(i,.)

real	getArcLength ()

basicInverseOptions	getBasicInverseOption () const

int	getBoundaryCondition (const int side, const int axis) const

virtual RealArray	getBoundingBox (const int &side=-1, const int &axis=-1) const

virtual int	getBoundingBox (const IntegerArray &indexRange, const IntegerArray &gridIndexRange, RealArray &xBounds, bool local=false) const

virtual int	getBoundingBox (const RealArray &rBounds, RealArray &xBounds) const

const BoundingBox &	getBoundingBoxTree (const int &side, const int &axis) const

int	getCoordinateEvaluationType (const coordinateSystem type) const

Bound	getDomainBound (const int side, const int axis) const

int	getDomainDimension () const

coordinateSystem	getDomainCoordinateSystem () const

Bound	getDomainCoordinateSystemBound (const int side, const int axis) const

mappingSpace	getDomainSpace () const

int	getGridDimensions (const int axis) const

virtual const realArray &	getGrid (MappingParameters &params=Overture::nullMappingParameters(), bool includeGhost=false)

virtual const RealArray &	getGridSerial (MappingParameters &params=Overture::nullMappingParameters(), bool includeGhost=false)

int	getID () const

int	getInvertible () const

periodicType	getIsPeriodic (const int axis) const

mappingCoordinateSystem	getMappingCoordinateSystem () const

aString	getName (const mappingItemName item) const

int	getGridIndexRange (int side, int axis)

int	getNumberOfGhostPoints (int side, int axis)

real	getParameter (const MappingParameters::realParameter &param) const

int	getParameter (const MappingParameters::intParameter &param) const

real	getPeriodVector (const int axis, const int direction) const

Bound	getRangeBound (const int side, const int axis) const

coordinateSystem	getRangeCoordinateSystem () const

Bound	getRangeCoordinateSystemBound (const int side, const int axis) const

int	getRangeDimension () const

mappingSpace	getRangeSpace () const

int	getShare (const int side, const int axis) const

real	getSignForJacobian () const

topologyEnum	getTopology (const int side, const int axis) const

coordinateSingularity	getTypeOfCoordinateSingularity (const int side, const int axis) const

bool	gridIsValid () const

int	hasACoordinateSingularity () const

intArray &	topologyMask ()

void	setArcLength (real length)

virtual void	setBasicInverseOption (const basicInverseOptions option)

virtual void	setBoundaryCondition (const int side, const int axis, const int bc)

virtual void	setCoordinateEvaluationType (const coordinateSystem type, const int trueOrFalse)

virtual void	setDomainBound (const int side, const int axis, const Bound domainBound)

virtual void	setDomainCoordinateSystem (const coordinateSystem domainCoordinateSystem)

virtual void	setDomainCoordinateSystemBound (const int side, const int axis, const Bound domainCoordinateSystemBound)

virtual void	setDomainDimension (const int domainDimension)

virtual void	setDomainSpace (const mappingSpace domainSpace)

virtual void	setGrid (realArray &grid, IntegerArray &gridIndexRange)

virtual void	setGridDimensions (const int axis, const int dim)

virtual void	setInvertible (const int invertible)

void	setID ()

virtual void	setIsPeriodic (const int axis, const periodicType isPeriodic)

virtual void	setMappingCoordinateSystem (const mappingCoordinateSystem mappingCoordinateSystem0)

virtual void	setName (const mappingItemName item, const aString &name)

void	setGridIndexRange (int side, int axis, int num)

void	setNumberOfGhostPoints (int side, int axis, int numGhost)

virtual void	setParameter (const MappingParameters::realParameter &param, const real &value)

virtual void	setParameter (const MappingParameters::intParameter &param, const int &value)

void	setPartition (Partitioning_Type &partition)

virtual void	setPeriodVector (const int axis, const int direction, const real periodVectorComponent)

virtual void	setRangeBound (const int side, const int axis, const Bound rangeBound)

virtual void	setRangeCoordinateSystem (const coordinateSystem rangeCoordinateSystem)

virtual void	setRangeCoordinateSystemBound (const int side, const int axis, const Bound rangeCoordinateSystemBound)

virtual void	setRangeDimension (const int rangeDimension)

virtual void	setRangeSpace (const mappingSpace rangeSpace)

virtual void	setShare (const int side, const int axis, const int share)

void	setSignForJacobian (const real signForJac)

virtual void	setTopology (const int side, const int axis, const topologyEnum topo)

virtual void	setTypeOfCoordinateSingularity (const int side, const int axis, const coordinateSingularity)

bool	usesDistributedInverse () const

bool	usesDistributedMap () const

virtual void	useRobustInverse (const bool trueOrFalse=TRUE)

bool	usingRobustInverse () const
	Return true if the robust inverse is used.

virtual int	outside (const realArray &x)

virtual int	setNumberOfGhostLines (IndexRangeType &numberOfGhostLinesNew)

void	setNumberOfDistributedGhostLines (int numGhost)

void	periodicShift (realArray &r, const Index &I)

Index	getIndex (const realArray &r, realArray &x, const realArray &xr, int &base, int &bound, int &computeMap, int &computeMapDerivative)

Public Member Functions inherited from ReferenceCounting
	ReferenceCounting ()

	ReferenceCounting (const ReferenceCounting &x, const CopyType ct=DEEP)

virtual	~ReferenceCounting ()

Integer	incrementReferenceCount ()

Integer	decrementReferenceCount ()

Integer	getReferenceCount () const

Logical	uncountedReferencesMayExist ()

Integer	getGlobalID () const

void	setGlobalID (int id)

virtual void	consistencyCheck () const

Public Attributes
int	nFilamentPoints

int	nSplinePoints

int	nThickSplinePoints

int	nEndPoints

real	filamentLength

real	xOffset

real	yOffset

real	sXDirection

real	sYDirection

real	thickness

real	endRadius

FilamentStretching	stretching

int	debug

real	timeOffset

bool	isFilamentInitialized

bool	geometricDataNeedsUpdate

bool	bodyFittedMappingNeedsUpdate

bool	centerLineNeedsUpdate

FilamentType	filamentType

BoundaryMotionType	motionType

FilamentBoundaryType	filamentBoundaryType

real	aTravelingWaveAmplitude

real	bTravelingWaveAmplitude

real	timeFrequencyTravelingWave

real	spaceFrequencyTravelingWave

real	timeForFilament

real	radius

real	perturbation1

real	perturbation2

int	circleMode1

int	circleMode2

real	circlePhase1

real	circlePhase2

real	xMotionDirection

real	yMotionDirection

real	motionVelocity

real	xOffsetCurrent

real	yOffsetCurrent

real	rotationAngleCurrent

real	rotationSpeed

realArray	x

realArray	r

realArray	sr

realArray	amplitude

realArray	dAmplitude

Mapping *	pUserDefinedCoreCurve

SplineMapping *	pFilament

SplineMapping *	pThickFilament

realArray	normalVector

realArray	tangentVector

realArray	xFilament

realArray	x_t

realArray	x_tt

realArray	xr

realArray	xr_t

realArray	xr_tt

realArray	normal_t

realArray	normal_tt

realArray	tangent_t

realArray	tangent_tt

realArray	xTop

realArray	xBottom

realArray	xLeadingEnd

realArray	xTrailingEnd

realArray	xThickFilament

int	numberOfDimensions

HyperbolicMapping *	pHyper

FilamentData *	filamentData

Public Attributes inherited from Mapping
int	computeMap

int	computeMapDerivative

int	base

int	bound

real	signForJacobian

ApproximateGlobalInverse *	approximateGlobalInverse

ExactLocalInverse *	exactLocalInverse

DistributedInverse *	distributedInverse

Additional Inherited Members
Static Public Member Functions inherited from Mapping
static void	openDebugFiles ()

static void	closeDebugFiles ()

static real	epsilon ()

static void	setMinimumNumberOfDistributedGhostLines (int numGhost)

static int	getGridMinAndMax (const realArray &u, const Range &R1, const Range &R2, const Range &R3, real uMin[3], real uMax[3], bool local=false)

static Mapping *	makeMapping (const aString &mappingClassName)

static MappingLinkedList &	staticMapList ()

Static Public Attributes inherited from Mapping
static int	useInitialGuessForInverse =TRUE

static int	debug =0

static FILE *	debugFile =NULL

static FILE *	pDebugFile =NULL

static const real	bogus =10.

Protected Member Functions inherited from Mapping
int	buildMappingParametersDialog (DialogData &dialog)

int	getMappingParametersOption (const aString &answer, DialogData &dialog, GenericGraphicsInterface &gi)
	: Look for a change to one of the mapping parameters.

int	updateMappingParametersDialog (DialogData &dialog)

void	initializePartition ()

int	mappingHasChanged ()

void	setGridIsValid ()

void	setDefaultMappingBounds (const mappingSpace ms, Bound mappingBound[3][2])

void	setDefaultCoordinateSystemBounds (const coordinateSystem cs, Bound csBound[3][2])

int	validSide (const int side) const

int	validAxis (const int axis) const

void	mappingError (const aString &subName, const int side, const int axis) const

Protected Attributes inherited from Mapping
int	dataBaseID

aString	className

int	domainDimension

int	rangeDimension

int	bc [2][3]

int	share [2][3]

periodicType	isPeriodic [3]

real	periodVector [3][3]

int	invertible

basicInverseOptions	basicInverseOption

int	periodicityOfSpace

coordinateSingularity	typeOfCoordinateSingularity [2][3]

int	coordinateEvaluationType [numberOfCoordinateSystems]

IndexRangeType	gridIndexRange

IndexRangeType	numberOfGhostPoints

realArray	grid

bool	inverseIsDistributed

bool	mapIsDistributed

int	numberOfDistributedGhostLines

bool	partitionInitialized

Partitioning_Type	partition

mappingSpace	domainSpace

mappingSpace	rangeSpace

coordinateSystem	domainCoordinateSystem

coordinateSystem	rangeCoordinateSystem

mappingCoordinateSystem	mappingCoordinateSystem0

Bound	domainBound [3][2]

Bound	rangeBound [3][2]

Bound	domainCoordinateSystemBound [3][2]

Bound	rangeCoordinateSystemBound [3][2]

topologyEnum	topology [3][2]

intArray *	topologyMaskPointer

real	arcLength

bool	remakeGrid

bool	remakeGridSerial

Static Protected Attributes inherited from Mapping
static int	defaultNumberOfGhostPoints =0

static int	minimumNumberOfDistributedGhostLines =1

Member Enumeration Documentation

enum FilamentMapping::BoundaryMotionType

Enumerator
NO_MOTION
RIGID_BODY_MOTION
TRAVELING_WAVE_MOTION
TRANSLATING_MOTION

enum FilamentMapping::FilamentBoundaryType

Enumerator
THICK_FILAMENT_BOUNDARY
ONE_SIDED_FILAMENT_BOUNDARY
THIN_TWO_SIDED_FILAMENT_BOUNDARY

enum FilamentMapping::FilamentType

Enumerator
OPEN_FILAMENT
CLOSED_FILAMENT
USER_DEFINED_CURVE_FILAMENT

Constructor & Destructor Documentation

FilamentMapping::FilamentMapping	(	int	nFilamentPoints = `17`,
		int	nEndPoints = `7`,
		real	thickness = `0.04`,
		real	endRadius = `0.02`
	)

References debug, DEBUG_PRINT_SUB, FALSE, and FilamentData::isEndStorageInitialized.

FilamentMapping::~FilamentMapping ( )

References debug, DEBUG_PRINT_SUB, and NULL.

FilamentMapping::FilamentMapping	(	const FilamentMapping &	map,
		const CopyType	copyType = `DEEP`
	)

References debug, DEBUG_PRINT_SUB, DEEP, endRadius, nFilamentPoints, and thickness.

Member Function Documentation

void FilamentMapping::basicInverse	(	const realArray &	x,
		realArray &	r,
		realArray &	rx,
		MappingParameters &	params
	)

virtual

Reimplemented from Mapping.

References debug, DEBUG_PRINT_SUB, and NULL.

void FilamentMapping::computeCircularFilament	(	real	tcomp,
		realArray &	r00,
		realArray &	x00,
		realArray &	xr00,
		real	xOffset00 = `0.`,
		real	yOffset00 = `0.`
	)

References debug, display(), evaluate(), r, and TRUE.

void FilamentMapping::computeCurveFrameTimeDerivatives	(	realArray &	xr00,
		realArray &	xr_t,
		realArray &	xr_tt,
		realArray &	n_t,
		realArray &	s_t,
		realArray &	n_tt,
		realArray &	s_tt
	)

References pow(), and s.

void FilamentMapping::computeDrFlatSmoothSpacing	(	real	dr00,
		real	sr00,
		real	thickness00,
		real	xtraScaling,
		int &	numberOfEndPoints
	)

void FilamentMapping::computeFlatSmoothSpacing	(	real	endSpacing,
		real	thickness00,
		real	xtraScaling,
		int &	numberOfEndPoints
	)

void FilamentMapping::computeGeometricData ( )

References assert, axis1, debug, FALSE, Mapping::functionPeriodic, Mapping::notPeriodic, NULL, pow(), TRUE, and xr.

void FilamentMapping::computeThickFilament ( )

..TOP & BOTTOM

References assert, axis1, debug, Mapping::functionPeriodic, SplineMapping::index, NULL, and TRUE.

void FilamentMapping::computeTranslatingMotionOffset	(	real	time00,
		real	xOffset00,
		real	yOffset00,
		real &	xNew,
		real &	yNew,
		real &	xNew_t,
		real &	yNew_t,
		real &	xNew_tt,
		real &	yNew_tt
	)

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::computeTravelingWaveFilament	(	real	t,
		realArray &	r,
		realArray &	x,
		realArray &	xr
	)

void FilamentMapping::computeTravelingWaveFilament	(	real	t,
		realArray &	r,
		realArray &	x,
		realArray &	xr,
		real	xOffset00,
		real	yOffset00
	)

References debug, and TRUE.

void FilamentMapping::computeTravelingWaveFilamentTimeDerivatives	(	real	tcomp,
		realArray &	r00,
		realArray &	x00,
		realArray &	xr00,
		realArray &	x_t,
		realArray &	x_tt,
		realArray &	xr_t,
		realArray &	xr_tt,
		const real	xOffset00 = `0.`,
		const real	yOffset00 = `0.`,
		const real	xOffset_t = `0.`,
		const real	yOffset_t = `0.`,
		const real	xOffset_tt = `0.`,
		const real	yOffset_tt = `0.`
	)

References debug, pow(), and TRUE.

void FilamentMapping::computeUserDefinedCenterLineFilament	(	real	t,
		realArray &	r,
		realArray &	x,
		realArray &	xr
	)

References assert, debug, DEBUG_PRINT_SUB, NULL, and TRUE.

void FilamentMapping::constructor	(	int	nFilamentPoints00,
		real	thickness00,
		real	endRadius00
	)

References assert, axis1, axis2, debug, DEBUG_PRINT_SUB, functionPeriodic, SplineMapping::index, Mapping::mappingName, NULL, and TRUE.

void FilamentMapping::copyBodyFittedMapping	(	HyperbolicMapping &	copyMap,
		aString *	pMappingRename = `NULL`
	)

References assert, debug, DEBUG_PRINT_SUB, Mapping::getName(), Mapping::mappingName, NULL, and Mapping::setName().

void FilamentMapping::displayParameters ( )

References debug, and Mapping::display().

void FilamentMapping::dotProduct	(	const realArray &	x,
		const realArray &	y,
		realArray &	out
	)

void FilamentMapping::evaluateAtTime ( real time00 )

References debug, and TRUE.

void FilamentMapping::evaluateCenterLineAtTime ( real time00 )

References assert, debug, FALSE, r, TRUE, and xr.

void FilamentMapping::evaluateSurfaceAtTime	(	real	time0,
		SplineMapping *	curvePosition
	)

void FilamentMapping::formChebyshevParametrization ( realArray & r00 )

void FilamentMapping::formNormalizedParametrization ( realArray & r00 )

References debug, and DEBUG_PRINT_SUB.

int FilamentMapping::get	(	const GenericDataBase &	dir,
		const aString &	name
	)

virtual

Reimplemented from Mapping.

References assert, aString, debug, GenericDataBase::find(), GenericDataBase::get(), Mapping::get(), GenericDataBase::getDistributed(), Mapping::makeMapping(), mappingClassName, NULL, r, GenericDataBase::virtualConstructor(), x, and xr.

void FilamentMapping::getAcceleration	(	realArray &	x_tt,
		realArray &	xr_tt
	)

aString FilamentMapping::getClassName ( void ) const

virtual

Reimplemented from Mapping.

References debug, and DEBUG_PRINT_SUB.

Referenced by operator=().

void FilamentMapping::getCoreDerivative ( realArray & xr00 )

References xr.

void FilamentMapping::getCorePoints ( realArray & x00 )

int FilamentMapping::getDefaultNumberOfThickFilamentPoints	(	int	nFilam,
		int	nEnd
	)

void FilamentMapping::getHyperbolicGridInfo ( )

References axis1, axis2, debug, and DEBUG_PRINT_SUB.

HyperbolicMapping * FilamentMapping::getHyperbolicMappingPointer ( )

References assert, debug, DEBUG_PRINT_SUB, and NULL.

int FilamentMapping::getLeadingEndNumberOfPoints ( )

int FilamentMapping::getNumberOfFilamentPoints ( )

int FilamentMapping::getNumberOfThickFilamentPoints ( )

void FilamentMapping::getParametrization ( realArray & r00 )

void FilamentMapping::getPerpendicular	(	const realArray &	x,
		realArray &	out
	)

void FilamentMapping::getStretchingParameters	(	int	i,
		real &	a,
		real &	b,
		real &	c
	)

void FilamentMapping::getSurfaceAcceleration	(	realArray &	coreAcceleration,
		realArray &	surfaceAcceleration
	)

Mapping * FilamentMapping::getSurfaceForHyperbolicMap ( )

References debug, and NULL.

void FilamentMapping::getSurfacePoints ( realArray & xSurface )

void FilamentMapping::getSurfaceVelocity	(	realArray &	coreVelocity,
		realArray &	surfaceVelocity
	)

int FilamentMapping::getTrailingEndNumberOfPoints ( )

void FilamentMapping::getTranslatingMotionParameters	(	real &	tangX,
		real &	tangY,
		real &	velo
	)

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::getVelocity	(	realArray &	x_t,
		realArray &	xr_t
	)

void FilamentMapping::initializeBodyFittedMapping ( Mapping * pSurface )

References assert, debug, DEBUG_PRINT_SUB, and NULL.

void FilamentMapping::initializeBodyFittedMapping ( )

References assert, debug, DEBUG_PRINT_SUB, and NULL.

void FilamentMapping::initializeFilamentStorage ( )

References assert, debug, DEBUG_PRINT_SUB, NULL, r, TRUE, x, and xr.

Mapping * FilamentMapping::make ( const aString & mappingClassName )

virtual

Reimplemented from Mapping.

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::map	(	const realArray &	r,
		realArray &	x,
		realArray &	xr = `Overture::nullRealDistributedArray()`,
		MappingParameters &	params = `Overture::nullMappingParameters()`
	)

virtual

Reimplemented from Mapping.

References assert, debug, DEBUG_PRINT_SUB, HyperbolicMapping::map(), and NULL.

FilamentMapping & FilamentMapping::operator= ( const FilamentMapping & xmap00 )

References amplitude, assert, aString, aTravelingWaveAmplitude, bodyFittedMappingNeedsUpdate, bTravelingWaveAmplitude, centerLineNeedsUpdate, circleMode1, circleMode2, circlePhase1, circlePhase2, dAmplitude, debug, debug, DEBUG_PRINT_SUB, filamentBoundaryType, filamentData, filamentLength, filamentType, geometricDataNeedsUpdate, getClassName(), FilamentData::isEndStorageInitialized, isFilamentInitialized, FilamentData::leadingEndExtra, FilamentData::leadingEndSpacing, motionType, motionVelocity, nFilamentPoints, FilamentData::nLeadingEndPoints, normalVector, nSplinePoints, FilamentData::nTrailingEndPoints, NULL, numberOfDimensions, Mapping::operator=(), perturbation1, perturbation2, pFilament, pHyper, pThickFilament, pUserDefinedCoreCurve, r, r, radius, rotationAngleCurrent, rotationSpeed, spaceFrequencyTravelingWave, sr, tangentVector, thickness, timeForFilament, timeFrequencyTravelingWave, timeOffset, FilamentData::trailingEndExtra, FilamentData::trailingEndSpacing, X, x, x, x_t, x_tt, xFilament, xMotionDirection, xOffset, xOffsetCurrent, xr, xr, xr_t, xr_tt, xThickFilament, yMotionDirection, yOffset, and yOffsetCurrent.

void FilamentMapping::printHyperbolicDimensions ( )

References axis1, and axis2.

int FilamentMapping::put	(	GenericDataBase &	dir,
		const aString &	name
	)		const

virtual

Reimplemented from Mapping.

References GenericDataBase::create(), debug, NULL, GenericDataBase::put(), Mapping::put(), GenericDataBase::putDistributed(), r, GenericDataBase::virtualConstructor(), x, and xr.

void FilamentMapping::regenerateBodyFittedMapping ( )

References assert, debug, DEBUG_PRINT_SUB, and NULL.

void FilamentMapping::regenerateBodyFittedMapping ( HyperbolicMapping * pHyper )

References assert, axis1, axis2, debug, FALSE, HyperbolicMapping::generateNew(), Mapping::getGridDimensions(), NULL, Mapping::reinitialize(), Mapping::setGridDimensions(), and HyperbolicMapping::setSurface().

void FilamentMapping::releaseHyperbolicMappingPointer ( HyperbolicMapping *& pHyp00 )

References debug, DEBUG_PRINT_SUB, and NULL.

void FilamentMapping::replaceHyperbolicMapping ( HyperbolicMapping * pNewHyper )

References debug, DEBUG_PRINT_SUB, FALSE, and NULL.

void FilamentMapping::saveCurve	(	const realArray &	curve,
		const aString &	filename
	)

void FilamentMapping::setCenterLineMapping ( Mapping * pMapping )

References debug, DEBUG_PRINT_SUB, NULL, TRUE, and ReferenceCounting::uncountedReferencesMayExist().

void FilamentMapping::setDefaultHyperbolicParameters ( )

References assert, axis2, HyperbolicMapping::dissipation, HyperbolicMapping::distanceToMarch, HyperbolicMapping::linesInTheNormalDirection, and NULL.

void FilamentMapping::setEndPointScaling	(	real	leadingXtra,
		real	trailingXtra
	)

References assert, debug, DEBUG_PRINT_SUB, and NULL.

void FilamentMapping::setFilamentBoundaryType ( FilamentBoundaryType filamBdryType00 )

References assert, debug, DEBUG_PRINT_SUB, NULL, and TRUE.

void FilamentMapping::setFilamentStorageNeedsUpdate ( )

References assert, and NULL.

void FilamentMapping::setFilamentTime ( real newTime )

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setFilamentTimeOffset ( real newTime )

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setFilamentType ( FilamentType filamentType00 )

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setHyperbolicGridDimensions	(	int	gridDimension1_,
		int	gridDimension2_,
		int	gridGenDimension1_,
		int	gridGenDimension2_
	)

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setHyperbolicGridInfo ( )

References assert, axis1, axis2, debug, DEBUG_PRINT_SUB, HyperbolicMapping::linesInTheNormalDirection, and NULL.

void FilamentMapping::setHyperbolicMappingParameters	(	real	distanceToMarch00 = `0.3`,
		real	dissipation00 = `0.2`
	)

References TRUE.

void FilamentMapping::setLeadingEndNumberOfPoints ( int jj )

void FilamentMapping::setLength ( real length00 )

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setMotionType ( BoundaryMotionType motionType00 )

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setNumberOfEndPoints ( int nEndPoints00 = 5 )

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::setNumberOfFilamentPoints	(	int	nFilamentPoints00,
		int	nSplinePoints
	)

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setNumberOfFilamentPoints ( int nFilamentPoints00 )

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::setNumberOfThickSplinePoints ( int nThickFilamPts )

References axis1, debug, and DEBUG_PRINT_SUB.

void FilamentMapping::setNumberOfThickSplinePoints ( )

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::setOffset	(	real	xOffset = `0.`,
		real	yOffset = `0.`
	)

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setStretchingParameters	(	int	i,
		real	a,
		real	b,
		real	c
	)

References TRUE.

void FilamentMapping::setThicknessAndEndRadius	(	real	thick00,
		real	endRadius00
	)

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setTrailingEndNumberOfPoints ( int jj )

void FilamentMapping::setTranslatingMotionParameters	(	real	tangX,
		real	tangY,
		real	velo
	)

References debug, and DEBUG_PRINT_SUB.

void FilamentMapping::setTravelingWaveParameters	(	real	length00 = `1.`,
		real	aParam00 = `0.1`,
		real	bParam00 = `0.05`,
		real	omega00 = `1.2`,
		real	knum00 = `1.2`
	)

References debug, DEBUG_PRINT_SUB, and TRUE.

void FilamentMapping::setupTimeDerivatives	(	realArray &	x_t,
		realArray &	x_tt,
		realArray &	xr,
		realArray &	xr_t,
		realArray &	xr_tt
	)

References xr.

int FilamentMapping::update ( MappingInformation & mapInfo )

virtual

--—FILAMENT TYPE: CLOSED FILAMENT

Reimplemented from Mapping.

References ListOfMappingRC::addElement(), GenericGraphicsInterface::appendToTheDefaultPrompt(), assert, aString, bb, c, MappingInformation::command, MappingInformation::commandOption, debug, DEBUG_PRINT_SUB, GenericGraphicsInterface::erase(), FALSE, MappingRC::getDomainDimension(), ListOfMappingRC::getLength(), GenericGraphicsInterface::getMenuItem(), MappingRC::getName(), MappingRC::getRangeDimension(), GI_PLOT_THE_OBJECT_AND_EXIT, GI_TOP_LABEL, MappingInformation::graphXInterface, GenericGraphicsInterface::inputString(), MappingInformation::interactive, MappingInformation::mappingList, mappingName, MappingRC::mapPointer, NULL, GenericGraphicsInterface::outputString(), PlotIt::plot(), MappingInformation::readOneCommand, GraphicsParameters::set(), sPrintF(), sScanF(), GenericGraphicsInterface::stopReadingCommandFile(), TRUE, GenericGraphicsInterface::unAppendTheDefaultPrompt(), HyperbolicMapping::update(), and Mapping::update().

bool FilamentMapping::updateFilamentAndGrid ( )

References assert, debug, FALSE, NULL, and TRUE.

void FilamentMapping::updateNumberOfEndPoints ( )

void FilamentMapping::useStretching	(	StretchMapping::StretchingType	st = `StretchMapping::inverseHyperbolicTangent`,
		int	numberOfLayers = `2`,
		bool	stretchFlag = `true`
	)

Member Data Documentation

realArray FilamentMapping::amplitude

Referenced by operator=().

real FilamentMapping::aTravelingWaveAmplitude

Referenced by operator=().

bool FilamentMapping::bodyFittedMappingNeedsUpdate

Referenced by operator=().

real FilamentMapping::bTravelingWaveAmplitude

Referenced by operator=().

bool FilamentMapping::centerLineNeedsUpdate

Referenced by operator=().

int FilamentMapping::circleMode1

Referenced by operator=().

int FilamentMapping::circleMode2

Referenced by operator=().

real FilamentMapping::circlePhase1

Referenced by operator=().

real FilamentMapping::circlePhase2

Referenced by operator=().

realArray FilamentMapping::dAmplitude

Referenced by operator=().

int FilamentMapping::debug

Referenced by operator=().

real FilamentMapping::endRadius

Referenced by FilamentMapping().

FilamentBoundaryType FilamentMapping::filamentBoundaryType

Referenced by operator=().

FilamentData* FilamentMapping::filamentData

Referenced by operator=().

real FilamentMapping::filamentLength

Referenced by operator=().

FilamentType FilamentMapping::filamentType

Referenced by operator=().

bool FilamentMapping::geometricDataNeedsUpdate

Referenced by operator=().

bool FilamentMapping::isFilamentInitialized

Referenced by operator=().

BoundaryMotionType FilamentMapping::motionType

Referenced by operator=().

real FilamentMapping::motionVelocity

Referenced by operator=().

int FilamentMapping::nEndPoints

int FilamentMapping::nFilamentPoints

Referenced by FilamentMapping(), and operator=().

realArray FilamentMapping::normal_t

realArray FilamentMapping::normal_tt

realArray FilamentMapping::normalVector

Referenced by operator=().

int FilamentMapping::nSplinePoints

Referenced by operator=().

int FilamentMapping::nThickSplinePoints

int FilamentMapping::numberOfDimensions

Referenced by operator=().

real FilamentMapping::perturbation1

Referenced by operator=().

real FilamentMapping::perturbation2

Referenced by operator=().

SplineMapping* FilamentMapping::pFilament

Referenced by operator=().

HyperbolicMapping* FilamentMapping::pHyper

Referenced by operator=().

SplineMapping* FilamentMapping::pThickFilament

Referenced by operator=().

Mapping* FilamentMapping::pUserDefinedCoreCurve

Referenced by operator=().

realArray FilamentMapping::r

Referenced by operator=().

real FilamentMapping::radius

Referenced by operator=().

real FilamentMapping::rotationAngleCurrent

Referenced by operator=().

real FilamentMapping::rotationSpeed

Referenced by operator=().

real FilamentMapping::spaceFrequencyTravelingWave

Referenced by operator=().

realArray FilamentMapping::sr

Referenced by operator=().

FilamentStretching FilamentMapping::stretching

real FilamentMapping::sXDirection

real FilamentMapping::sYDirection

realArray FilamentMapping::tangent_t

realArray FilamentMapping::tangent_tt

realArray FilamentMapping::tangentVector

Referenced by operator=().

real FilamentMapping::thickness

Referenced by FilamentMapping(), and operator=().

real FilamentMapping::timeForFilament

Referenced by operator=().

real FilamentMapping::timeFrequencyTravelingWave

Referenced by operator=().

real FilamentMapping::timeOffset

Referenced by operator=().

realArray FilamentMapping::x

Referenced by operator=().

realArray FilamentMapping::x_t

Referenced by operator=().

realArray FilamentMapping::x_tt

Referenced by operator=().

realArray FilamentMapping::xBottom

realArray FilamentMapping::xFilament

Referenced by operator=().

realArray FilamentMapping::xLeadingEnd

real FilamentMapping::xMotionDirection

Referenced by operator=().

real FilamentMapping::xOffset

Referenced by operator=().

real FilamentMapping::xOffsetCurrent

Referenced by operator=().

realArray FilamentMapping::xr

Referenced by operator=().

realArray FilamentMapping::xr_t

Referenced by operator=().

realArray FilamentMapping::xr_tt

Referenced by operator=().

realArray FilamentMapping::xThickFilament

Referenced by operator=().

realArray FilamentMapping::xTop

realArray FilamentMapping::xTrailingEnd

real FilamentMapping::yMotionDirection

Referenced by operator=().

real FilamentMapping::yOffset

Referenced by operator=().

real FilamentMapping::yOffsetCurrent

Referenced by operator=().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Public Attributes

Additional Inherited Members

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation